Integrating and representing genome, metagenome, taxonomy resources and the analysis datasets with Semantic Web Technologies.
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Features

Data sources of MicrobeDB.jp ver. 3

Metagenome and Microbes Environmental Ontology 2401 Taxonomy 129342 Ortholog Groups 4203173 Microbial Phenotype Ontology 277 Genome and Metagenome Sample 1920339 Culture collections in Japan 38414 Pathogenic Disease Ontology 387 Human Microbiome Associated Disease Ontology 305 KEGG Orthology 22421
Last Modified date: 2020-02-16

Keyword Search

MicrobeDB.jp provides a keyword search function with a simple interface. The keyword search gives the user free-text access to the literal fields of all RDF/OWL resources on MicrobeDB.jp. Click Text search .

Representation and Visualization

For representation of database resources and analysis results, MicrobeDB.jp project has developed 197 TogoStanza, whch is a generic Web framework which enables the visualizing of reusable Web components that are embeddable into any Web applications. See TogoStanza List for more information.

Comparative Analysis

MicrobeDB.jp provides Comparative Analysis Tools between the metagenome samples , the environment terms , the taxa , and sample metadata and taxonomic/functional analysis based on TogoStanza framework. If you are interested in comparative analysis, it can be visualized by using a comparison tool.

Upload Your Data

By uploading the data to MicrobeDB.jp, you can execute comparative analysis between your data and genomic and metagenomic analysis results on MicrobeDB.jp. For that, you need to CREATE your account and Sign in .